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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25844199_25845929_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25844199 - 25845929
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGGGATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAACC
Flanking Amino Acid:
KKKADLMREEKAELMHQYAE
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
58.5
0.19
1.1
54.5
45
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
73.3
0.71
1.5
81.85
31.3

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045695
25807351 - 25863290
55940
ENSAPLT00000045482
25809529 - 25863290
53762
ENSAPLT00000005309
25807356 - 25863290
55935