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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25852807_25860530_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25852807 - 25860530
Intron Length:
7724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGTATA
5'SS Class:
major
3'SS Sequence:
TTTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTATTTTACCT
Flanking Amino Acid:
RAELGRAAALKQEEKKRKSQ
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
80.8
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
36.4
-1.5
2.7
43.6
37.4
Minor BPS
61
0.42
1.6
78.29
38.3

Associated Gene:

Gene:
CFAP99
Ensembl Gene ID:
ENSAPLG00000005144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045695
25807351 - 25863290
55940
ENSAPLT00000045482
25809529 - 25863290
53762
ENSAPLT00000005309
25807356 - 25863290
55935