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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2586233_2587154_F

Intron Information:

Intron Rank:
141858
Intron Class:
major
Intron Phase:
Intron Coordinates:
2586233 - 2587154
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83
0.74
0.7
81.7
29.6
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
75.5
0.88
1.4
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026363
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037149
2585731 - 2593865
8135