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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2587204_2588887_F

Intron Information:

Intron Rank:
141859
Intron Class:
major
Intron Phase:
Intron Coordinates:
2587204 - 2588887
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.6
84.5
23.4
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026363
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037149
2585731 - 2593865
8135