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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25873096_25876820_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25873096 - 25876820
Intron Length:
3725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAATGAAT
5'SS Class:
major
3'SS Sequence:
AAATAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTAACTTTAAAT
Flanking Amino Acid:
DLTHNDSVVVKNQRRRRNLR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
74.3
35.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.8
0.4
1.1
58.9
45.2
Minor 5ss
35.7
-1.6
3.3
48.9
41.4
Minor BPS
63.8
0.51
1.5
74.87
41.6

Associated Gene:

Gene:
RNF4
Ensembl Gene ID:
ENSAPLG00000005244
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005422
25871468 - 25880132
8665