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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25876987_25879597_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25876987 - 25879597
Intron Length:
2611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATG
5'SS Class:
major
3'SS Sequence:
CCTTTACCACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
GPLEDETASSKPSGTVSCPI
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.2
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
59.7
0.22
1.1
58.3
36.5
Minor 5ss
47.1
-0.3
2.5
59.8
38.9
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
RNF4
Ensembl Gene ID:
ENSAPLG00000005244
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005422
25871468 - 25880132
8665