About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25879647_25879982_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25879647 - 25879982
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
CTTACTCCAAAT
Flanking Amino Acid:
CPICMDGYSEIVQSGRLIVS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
46.1
-0.2
2
67.13
43.2

Associated Gene:

Gene:
RNF4
Ensembl Gene ID:
ENSAPLG00000005244
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005422
25871468 - 25880132
8665