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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2588993_2593679_F

Intron Information:

Intron Rank:
141860
Intron Class:
major
Intron Phase:
Intron Coordinates:
2588993 - 2593679
Intron Length:
4687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATTG
5'SS Class:
major
3'SS Sequence:
CATGTCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GCATTCATAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.9
38
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
69.8
0.45
1
65.3
40.7
Minor 5ss
49.4
-0
2.7
64.8
40.9
Minor BPS
48.9
-0
1.9
66.34
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026363
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047889
2588499 - 2598196
9698
ENSAPLT00000037149
2585731 - 2593865
8135