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Intron Name: Anas_platyrhynchos_platyrhynchos_4_25938026_25940918_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

25938026 - 25940918

Intron Length:

2893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAA

U12 Branch Point Sequence:

ATGCTCTCAAAA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.2

34.9

Major BPS

73.4

0.58

0.9

75.3

29.7

Major PPT

87.3

0.84

0.6

24.1

Minor 5ss

31.9

-2.1

3.3

41.7

44.9

Minor BPS

-0

1.6

60.78

38.7

Associated Gene:

Gene:

FAM193A

Ensembl Gene ID:

ENSAPLG00000005276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005489

25937960 - 25983868

45909