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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25941165_25943438_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25941165 - 25943438
Intron Length:
2274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
AAGTTGCTACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
39.9
-0.7
2.3
50.85
40.7

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026586
25940919 - 25983868
42950
ENSAPLT00000025172
25940919 - 25978617
37699
ENSAPLT00000005489
25937960 - 25983868
45909