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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25943606_25943884_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25943606 - 25943884
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCGTGATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
TTGACAGTAACT
Flanking Amino Acid:
ACNCEACNERREISAETERE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
76.2
0.59
1
69.4
40.7
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
51.4
0.12
2.3
78
43.9

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025172
25940919 - 25978617
37699
ENSAPLT00000005489
25937960 - 25983868
45909
ENSAPLT00000026586
25940919 - 25983868
42950