About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25955416_25961681_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25955416 - 25961681
Intron Length:
6266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTACTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATAATTTACTT
Flanking Amino Acid:
KRIDDYVDEQLNNKKALAGE
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.1
0.63
0.9
75.2
39.1
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
50.2
0.08
1.8
70.67
40.5

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026586
25940919 - 25983868
42950