Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25960136_25961681_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25960136 - 25961681

Intron Length:

1546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

TAATTTACTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TATAATTTACTT

Flanking Amino Acid:

FKQRRFIEEQLNNKKALAGE

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

78.1

0.63

0.9

75.2

39.1

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

50.2

0.08

1.8

70.67

40.5

Associated Gene:

Gene:

FAM193A

Ensembl Gene ID:

ENSAPLG00000005276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025172

25940919 - 25978617

37699

ENSAPLT00000005489

25937960 - 25983868

45909