About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25962195_25963940_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25962195 - 25963940
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CTCTTCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTTACCTAAGCC
Flanking Amino Acid:
ILADNGSAPTFGSDDEDVAP
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
79.3
0.66
0.7
77.1
25
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
58.8
0.26
2
75.26
41.2

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026586
25940919 - 25983868
42950
ENSAPLT00000025172
25940919 - 25978617
37699
ENSAPLT00000005489
25937960 - 25983868
45909