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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25971919_25972240_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25971919 - 25972240
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCCCCTCAATT
Flanking Amino Acid:
KVSSKRPSSIGEVFHNINKE
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
65
0.34
0.9
62.5
32.1
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
68
0.64
1.5
81.83
39.8

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005489
25937960 - 25983868
45909
ENSAPLT00000026586
25940919 - 25983868
42950
ENSAPLT00000025172
25940919 - 25978617
37699