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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25972524_25973635_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25972524 - 25973635
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTAACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTGCTTTAACA
Flanking Amino Acid:
SSVSAPPSVCSDPDCEGHRC
Intron Amino Acid Position:
865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
70.8
0.47
1
65.7
39
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
74.5
0.77
1.4
78.6
38.6

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026586
25940919 - 25983868
42950
ENSAPLT00000025172
25940919 - 25978617
37699
ENSAPLT00000005489
25937960 - 25983868
45909