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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_25973823_25975613_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25973823 - 25975613
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TGATGTCCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TAGTCACTAAAT
Flanking Amino Acid:
CYCEFFGHGGPPAAPTSRNY
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
62.3
0.28
1
60.5
41.3
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
49.9
0.07
2
73.05
42.8

Associated Gene:

Gene:
FAM193A
Ensembl Gene ID:
ENSAPLG00000005276
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026586
25940919 - 25983868
42950
ENSAPLT00000025172
25940919 - 25978617
37699
ENSAPLT00000005489
25937960 - 25983868
45909