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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26048410_26048978_F

Intron Information:

Intron Rank:
145408
Intron Class:
major
Intron Phase:
Intron Coordinates:
26048410 - 26048978
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TAGACAATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
67.1
38.3
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
76.9
0.61
0.9
73
37.4
Minor 5ss
44.3
-0.6
3.1
57.9
46.7
Minor BPS
48.9
-0
1.9
68.54
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028391
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042531
26048110 - 26054226
6117