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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26062092_26062649_F

Intron Information:

Intron Rank:
129622
Intron Class:
major
Intron Phase:
Intron Coordinates:
26062092 - 26062649
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TTCTCTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.7
25.4
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
87.3
0.84
0.8
80.5
37
Minor 5ss
29
-2.4
2.7
32.7
42.2
Minor BPS
54
0.21
1.9
76.06
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019758
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019286
26061791 - 26063445
1655