About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26095244_26103626_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26095244 - 26103626
Intron Length:
8383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTAAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTGTTCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.5
0.42
1.1
60.3
44.1
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
76.4
0.91
1.2
82.85
39.2

Associated Gene:

Gene:
SH3BP2
Ensembl Gene ID:
ENSAPLG00000005759
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027522
26079114 - 26114662
35549