Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26113806_26114028_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26113806 - 26114028

Intron Length:

223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTGC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

TTTTTCTTTAAG

Flanking Amino Acid:

IRNSSTKAGKVLVVWDQSAE

Intron Amino Acid Position:

509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

73.2

39.3

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

79.7

0.67

84.1

30.5

Minor 5ss

46.1

-0.4

2.6

62.1

42.6

Minor BPS

62.2

0.24

1.8

72.26

40.2

Associated Gene:

Gene:

SH3BP2

Ensembl Gene ID:

ENSAPLG00000005759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027522

26079114 - 26114662

35549

ENSAPLT00000006006

26098201 - 26114662

16462