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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26148246_26156079_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26148246 - 26156079
Intron Length:
7834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTCTTTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
69.1
0.43
0.7
63.4
24.7
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
74.4
0.75
1.1
76.89
33.8

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042141
26148155 - 26184352
36198
ENSAPLT00000006429
26148155 - 26184030
35876