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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26156293_26157502_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26156293 - 26157502
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
GTCCTGTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GCTTGCTTAACA
Flanking Amino Acid:
KRVSMILQSPAFCEELESMI
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
67.9
0.4
1.1
60.7
44.7
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
69.4
0.6
1.8
75.93
41.5

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027732
26156080 - 26186507
30428
ENSAPLT00000048033
26156080 - 26186507
30428
ENSAPLT00000006429
26148155 - 26184030
35876
ENSAPLT00000047390
26156080 - 26184352
28273
ENSAPLT00000043544
26156080 - 26186507
30428
ENSAPLT00000042141
26148155 - 26184352
36198