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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26157666_26158736_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26157666 - 26158736
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
ATCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCTTCCCATCT
Flanking Amino Acid:
PQGGMAALNMSLGMVTPVND
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
64.8
35.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
83.9
0.76
0.8
81
30.2
Minor 5ss
28.8
-2.4
3
29
36.8
Minor BPS
47.4
-0.1
2.1
72.42
44.5

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027732
26156080 - 26186507
30428
ENSAPLT00000048033
26156080 - 26186507
30428
ENSAPLT00000006429
26148155 - 26184030
35876
ENSAPLT00000047390
26156080 - 26184352
28273
ENSAPLT00000043544
26156080 - 26186507
30428
ENSAPLT00000042141
26148155 - 26184352
36198