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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26158889_26161867_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26158889 - 26161867
Intron Length:
2979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTGTAATAACT
Flanking Amino Acid:
WSQLIYNHITARVNSEQEHF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
79
0.65
0.7
78.1
29.5
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
55.6
0.25
2
81.75
39.5

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042141
26148155 - 26184352
36198
ENSAPLT00000027732
26156080 - 26186507
30428
ENSAPLT00000006429
26148155 - 26184030
35876
ENSAPLT00000048033
26156080 - 26186507
30428
ENSAPLT00000043544
26156080 - 26186507
30428