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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26158889_26162765_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26158889 - 26162765
Intron Length:
3877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
WSQLIYNHITVKINIQGDVV
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.7
0.83
0.7
78.3
35.2
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047390
26156080 - 26184352
28273