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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26167043_26170123_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26167043 - 26170123
Intron Length:
3081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGACG
5'SS Class:
major
3'SS Sequence:
CTTGACATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTGTTCTTGACA
Flanking Amino Acid:
NGSSPKSKTKWTKEDGHRTA
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.8
40.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74
0.54
1
65.8
39.5
Minor 5ss
33.2
-1.9
3
39.9
45.9
Minor BPS
71.4
0.67
1.2
73.38
39

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043544
26156080 - 26186507
30428
ENSAPLT00000042141
26148155 - 26184352
36198
ENSAPLT00000027732
26156080 - 26186507
30428
ENSAPLT00000048033
26156080 - 26186507
30428
ENSAPLT00000006429
26148155 - 26184030
35876
ENSAPLT00000047390
26156080 - 26184352
28273