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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26170226_26171314_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26170226 - 26171314
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTCCTTTACA
Flanking Amino Acid:
PKEVQEMRNKIREQNLQDIK
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
80.8
32.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.2
0.88
0.6
83.6
24.7
Minor 5ss
39.8
-1.1
2.5
51.4
45.2
Minor BPS
76.7
0.84
1.6
83.52
37

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042141
26148155 - 26184352
36198
ENSAPLT00000027732
26156080 - 26186507
30428
ENSAPLT00000048033
26156080 - 26186507
30428
ENSAPLT00000006429
26148155 - 26184030
35876
ENSAPLT00000047390
26156080 - 26184352
28273
ENSAPLT00000043544
26156080 - 26186507
30428