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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26171405_26171499_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26171405 - 26171499
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATTCTTTAATT
Flanking Amino Acid:
GVVVDRSLVQRVTVYKDAPL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.7
0.53
1
69.7
40.3
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
85.6
1.19
0.9
93.01
28.5

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047390
26156080 - 26184352
28273
ENSAPLT00000042141
26148155 - 26184352
36198
ENSAPLT00000006429
26148155 - 26184030
35876