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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26171405_26177963_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26171405 - 26177963
Intron Length:
6559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTATCTTAATT
Flanking Amino Acid:
GVVVDRSLVQGELVTASKAI
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.6
0.82
0.9
88.2
29.1
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
75.5
0.88
1.2
85.2
34.9

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048033
26156080 - 26186507
30428