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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26182444_26183999_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26182444 - 26183999
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
GTCCGTCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
GGGTCATTATCT
Flanking Amino Acid:
DGNLTNWEGLQDTAGPDLQR
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
61.6
0.26
0.9
59.6
36.9
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
53.8
0.2
1.9
71.07
45.1

Associated Gene:

Gene:
ADD1
Ensembl Gene ID:
ENSAPLG00000006148
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006429
26148155 - 26184030
35876