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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26215148_26215502_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26215148 - 26215502
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
GTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AAATTTTTAACA
Flanking Amino Acid:
ARMQLSEIMERDSARKRKVK
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.3
0.75
0.9
76.3
37.8
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
70.9
0.65
1.1
71.46
34

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520