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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26221389_26222244_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26221389 - 26222244
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCTTTTTTATA
Flanking Amino Acid:
FIYMSQLLTKCRITTLQDVI
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
90.6
0.91
0.6
87.5
23
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
59.5
0.29
1.6
69.68
37.1

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520