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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26222347_26224151_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26222347 - 26224151
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
TATATGCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTCTTTTATAT
Flanking Amino Acid:
GRATFPGLDMLIYLKITSLL
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
67.8
37.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.3
0.41
1.1
66.2
44.8
Minor 5ss
39.5
-1.2
2.9
49.3
41.3
Minor BPS
51.3
0.12
1.7
69.78
41.4

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520