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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26225983_26226236_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
26225983 - 26226236
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
GTGCTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TAATTTGTAACA
Flanking Amino Acid:
LAVGNKTKLEKLLGFLFDYI
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
79.3
0.66
0.9
73.2
37.2
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
55.6
0.17
2
68.62
37.8

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520