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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26226368_26227704_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26226368 - 26227704
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGTTTTTACAT
Flanking Amino Acid:
AKAELPYTFAVPESYEKFKS
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.1
0.68
0.8
74.4
34.8
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
58
0.33
1.7
76.07
41.1

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520