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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26228054_26228824_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26228054 - 26228824
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTGTTTTAACT
Flanking Amino Acid:
KDDRRLLSYKDGKIHIENEE
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.5
0.53
1
69.7
35.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
67.6
0.63
1.4
77.06
40.2

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520