About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26233222_26234496_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26233222 - 26234496
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTACTATCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTATTTAATT
Flanking Amino Acid:
MIRRFTLERQQNYGKKNIYN
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.6
0.42
0.8
66.5
34.3
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520