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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26234632_26236369_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26234632 - 26236369
Intron Length:
1738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATTTAATC
Flanking Amino Acid:
GVSRSKAIKKRTQTLLKEYK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.6
0.78
0.7
78.1
35
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
66.9
0.51
1.5
76
34.1

Associated Gene:

Gene:
NOP14
Ensembl Gene ID:
ENSAPLG00000006726
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007021
26215048 - 26236567
21520