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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26254700_26256037_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26254700 - 26256037
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTCTGTTAATC
Flanking Amino Acid:
SRFLQWKWLEKQPVTKHTFR
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
74.2
0.55
1
74.4
39.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
60.3
0.3
2
75.09
35.7

Associated Gene:

Gene:
GRK4
Ensembl Gene ID:
ENSAPLG00000007220
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041520
26237329 - 26267833
30505
ENSAPLT00000007574
26237329 - 26269458
32130