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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26261617_26264278_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26261617 - 26264278
Intron Length:
2662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTAACACGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTCTTTTAACA
Flanking Amino Acid:
KPENILLDDCGHIRISDLGL
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
57.8
0.18
1.1
51.9
41.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
72.8
0.71
1.1
77.15
33.2

Associated Gene:

Gene:
GRK4
Ensembl Gene ID:
ENSAPLG00000007220
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041520
26237329 - 26267833
30505
ENSAPLT00000007574
26237329 - 26269458
32130