About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26266771_26267647_F


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
26266771 - 26267647

Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTATTGTAT

5'SS Class:
major

3'SS Sequence:
ATGTCTTTCAAAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATTTCAT

U12 Branch Point Sequence:
GGATACTTAATT

Flanking Amino Acid:
GCVSIPWQNEMIETGCFEDI

Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.4
0.55
1
70.2
36.1

Major BPS
91.2
1.02
0.7
91.7
20.2

Major PPT
66.6
0.37
1.1
67.1
37.8

Minor 5ss
44.6
-0.6
3.2
64.1
47.4

Minor BPS
66.4
0.59
1.5
75.99
40.1

Associated Gene:

Gene:
GRK4

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

26237329 - 26267833
30505

26237329 - 26269458
32130