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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26276898_26282398_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26276898 - 26282398
Intron Length:
5501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TGTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTCATT
Flanking Amino Acid:
AAIPEEPLQRPKKELSTTKK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
59.7
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
28.5
-2.5
3.1
35.6
41.4
Minor BPS
58.4
0.35
1.7
79.53
37.3

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747