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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26287174_26288219_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26287174 - 26288219
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GCTTTATGAAAT
Flanking Amino Acid:
QLELYKEIKKNGASRSLRAA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
75.5
0.63
1
66
40.9
Major PPT
69.2
0.43
0.9
67.2
38.9
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
49
0
1.8
68.03
42.1

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747