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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26288300_26288726_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26288300 - 26288726
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTTCTTACCT
Flanking Amino Acid:
LAHLVRPQKCRPYLVNLLPC
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
35.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
68.3
0.41
0.9
67.3
38.4
Minor 5ss
43.5
-0.7
2.9
56.9
47.3
Minor BPS
72.7
0.79
1.6
87.1
39

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747