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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26290723_26291151_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26290723 - 26291151
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ACATACTTACTC
Flanking Amino Acid:
ISPSPDQLVQVYELTLHYTQ
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.8
0.8
0.7
84.6
30.3
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
49.8
-0
1.8
58.38
40.7

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747