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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26298085_26298358_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26298085 - 26298358
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
CCTTCTTCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTGTAATGAATT
Flanking Amino Acid:
SSESFRNSSIALQQPHLLKT
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
37.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
73.6
0.53
1
74.2
28.4
Minor 5ss
45.8
-0.4
2.5
55.3
44.2
Minor BPS
48.5
-0
1.9
68.27
42.1

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747