Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26298478_26299412_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26298478 - 26299412

Intron Length:

935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TTGCCTTCAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTTATTTATAT

Flanking Amino Acid:

AADPGDHENKPSRIKGDIGH

Intron Amino Acid Position:

601

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

35.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

69.8

0.45

0.9

66.4

34.4

Minor 5ss

28.4

-2.5

2.8

34.6

41.3

Minor BPS

0.36

1.9

82.22

38.9

Associated Gene:

Gene:

HTT

Ensembl Gene ID:

ENSAPLG00000007777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008199

26276572 - 26355318

78747