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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26299525_26299919_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26299525 - 26299919
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTAAAACT
Flanking Amino Acid:
ASFLLTGEKGALVPDRDVRV
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.1
0.81
0.7
79.7
32.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
51.9
0.14
1.9
75.66
41.6

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747