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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_26300966_26301050_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26300966 - 26301050
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
CCTTTTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAT
Flanking Amino Acid:
KWLINIRSSTGNLFSLVDCI
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.5
0.64
0.9
80.3
31.8
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
66.3
0.59
1.4
80.02
35.4

Associated Gene:

Gene:
HTT
Ensembl Gene ID:
ENSAPLG00000007777
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008199
26276572 - 26355318
78747